If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ), 'gf_id' => 'ORTHO05D000465', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ), 'data_identifier' => 'ORTHO05D000465', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000465', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '899', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24480' => 'bna', 'A09p09080' => 'bna', 'A09p28350' => 'bna', 'Aa31LG10G5820' => 'aar', 'Aa31LG3G16540' => 'aar', 'Aa31LG3G16550' => 'aar', 'Aa31LG3G16560' => 'aar', 'Aa31LG3G16610' => 'aar', 'Aa31sc1606G10' => 'aar', 'Aa31sc1606G20' => 'aar', 'Actinidia02396' => 'ach', 'Actinidia10048' => 'ach', 'Actinidia19247' => 'ach', 'Actinidia20145' => 'ach', 'Actinidia24563' => 'ach', 'Actinidia26776' => 'ach', 'Actinidia28818' => 'ach', 'Ah.02g113750' => 'amhyb', 'Ah.02g113760' => 'amhyb', 'Ah.03g139840' => 'amhyb', 'Ah.12g053920' => 'amhyb', 'Ah.12g053930' => 'amhyb', 'AL3G39200' => 'aly', 'AL8G23620' => 'aly', 'AL8G43150' => 'aly', 'Aqoxy101s001' => 'aox', 'Aqoxy101s002' => 'aox', 'Aqoxy1G03447' => 'aox', 'Aqoxy2G01331' => 'aox', 'Aqoxy2G01332' => 'aox', 'Aqoxy5G01155' => 'aox', 'Aqoxy5G01156' => 'aox', 'Aqoxy5G03837' => 'aox', 'Aqoxy6G00834' => 'aox', 'Aqoxy6G00835' => 'aox', 'Aqoxy6G00836' => 'aox', 'Aqoxy6G00838' => 'aox', 'Aqoxy6G00841' => 'aox', 'Aqoxy6G00842' => 'aox', 'Aqoxy6G00843' => 'aox', 'Aqoxy6G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BG85J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4H9MXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EGK5L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9RF0MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9SI2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AX22IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWY9WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E75ZZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EHH0JV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES3MZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8VGC7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICJP4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ9SDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0SET5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS71V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LGK5XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MD2VAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8XZQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R13R58' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7GC1L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S01ZUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAMK34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUE09J' => 'arhy', 'AT2G22590' => 'ath', 'AT5G49690' => 'ath', 'AT5G65550' => 'ath', 'ATR0165G019' => 'atr', 'ATR0165G064' => 'atr', 'ATR0767G067' => 'atr', 'ATR0767G102' => 'atr', 'ATR0767G157' => 'atr', 'ATR0767G247' => 'atr', 'ATR1098G027' => 'atr', 'ATR1098G059' => 'atr', 'Atru.chr3.1223' => 'acertr', 'Atru.chr3.1224' => 'acertr', 'Atru.chr3.1225' => 'acertr', 'Atru.chr3.1226' => 'acertr', 'Atru.chr3.1227' => 'acertr', 'Atru.chr3.1232' => 'acertr', 'AUR62003676' => 'cqu', 'AUR62008462' => 'cqu', 'AUR62014360' => 'cqu', 'AUR62017986' => 'cqu', 'AUR62018828' => 'cqu', 'AUR62019101' => 'cqu', 'AUR62021630' => 'cqu', 'AUR62021633' => 'cqu', 'BcaB01g01542' => 'bca', 'BcaB03g13708' => 'bca', 'BcaB04g20021' => 'bca', 'BcaC04g21081' => 'bca', 'BcaC04g21084' => 'bca', 'BcaC04g23258' => 'bca', 'BcaC05g27818' => 'bca', 'BcaC05g27910' => 'bca', 'BolC5t32545H' => 'bol', 'BolC5t32652H' => 'bol', 'BolC8t47972H' => 'bol', 'BolC9t53958H' => 'bol', 'BolC9t56424H' => 'bol', 'BraA05t21338Z' => 'bra', 'BraA09t36560Z' => 'bra', 'BraA09t38404Z' => 'bra', 'C05p38180' => 'bna', 'C05p39190' => 'bna', 'C09p10570' => 'bna', 'C09p35920' => 'bna', 'CAN.G1771.1' => 'can', 'CAN.G1771.2' => 'can', 'CAN.G1771.4' => 'can', 'CAN.G1771.5' => 'can', 'CAN.G250.6' => 'can', 'CAN.G78.115' => 'can', 'CANSAT01G2476' => 'cansat', 'CANSAT01G2477' => 'cansat', 'CANSAT21G2275' => 'cansat', 'CANSAT37G0001' => 'cansat', 'CANSAT37G0004' => 'cansat', 'CANSAT37G0009' => 'cansat', 'CANSAT37G0011' => 'cansat', 'CANSAT37G0012' => 'cansat', 'CANSAT37G0013' => 'cansat', 'CANSAT37G0014' => 'cansat', 'CANSAT37G0021' => 'cansat', 'CANSAT37G0024' => 'cansat', 'CANSAT37G0026' => 'cansat', 'CARHR113770' => 'chi', 'CARHR113780' => 'chi', 'CARHR113790' => 'chi', 'CARHR113800' => 'chi', 'CARHR259150' => 'chi', 'CARHR279530' => 'chi', 'Carub.0004s0174' => 'cru', 'Carub.0005s0422' => 'cru', 'Carub.0005s0424' => 'cru', 'Carub.0008s0957' => 'cru', 'Ca_00116_v3' => 'car', 'Ca_00117_v3' => 'car', 'Ca_04032_v3' => 'car', 'Ca_04033_v3' => 'car', 'Ca_23596_v3' => 'car', 'Cc00_g17850' => 'ccan', 'Cc00_g24300' => 'ccan', 'Cc00_g24310' => 'ccan', 'Cc00_g24320' => 'ccan', 'Cc00_g30490' => 'ccan', 'Cc00_g31460' => 'ccan', 'Cc02_g20860' => 'ccan', 'Cc03_g12510' => 'ccan', 'Cc07_g13900' => 'ccan', 'Cc07_g13910' => 'ccan', 'Cc07_g13920' => 'ccan', 'Cc07_g13930' => 'ccan', 'Cc07_g13940' => 'ccan', 'Cc07_g13950' => 'ccan', 'Cc07_g13960' => 'ccan', 'Cc10_g08470' => 'ccan', 'Cc10_g08480' => 'ccan', 'Cc11_g01180' => 'ccan', 'CDE06G1691' => 'cde', 'CDE06G2118' => 'cde', 'Cfa004412' => 'cfa', 'Cfa004942' => 'cfa', 'Cfa005747' => 'cfa', 'Cfa006857' => 'cfa', 'Cfa006858' => 'cfa', 'Cfa006869' => 'cfa', 'Cfa006870' => 'cfa', 'Cfa006871' => 'cfa', 'Ciclev10010307m.g' => 'ccl', 'Ciclev10019998m.g' => 'ccl', 'Ciclev10025508m.g' => 'ccl', 'CiPaw.07G046100' => 'cil', 'CiPaw.07G046200' => 'cil', 'CiPaw.07G163900' => 'cil', 'CiPaw.08G141100' => 'cil', 'CiPaw.08G141200' => 'cil', 'CiPaw.08G141300' => 'cil', 'CiPaw.08G141400' => 'cil', 'CiPaw.08G141500' => 'cil', 'CiPaw.08G141700' => 'cil', 'CiPaw.08G141800' => 'cil', 'CiPaw.08G141900' => 'cil', 'CiPaw.08G142000' => 'cil', 'CiPaw.08G142100' => 'cil', 'ClCG01G018300' => 'cla', 'ClCG05G001370' => 'cla', 'ClCG11G014690' => 'cla', 'COL.COLO4_12752' => 'col', 'COL.COLO4_12753' => 'col', 'COL.COLO4_12755' => 'col', 'COL.COLO4_18165' => 'col', 'COL.COLO4_18166' => 'col', 'COL.COLO4_18167' => 'col', 'COL.COLO4_18168' => 'col', 'COL.COLO4_27371' => 'col', 'COL.COLO4_27372' => 'col', 'COL.COLO4_35266' => 'col', 'Cpa.g.sc42.123' => 'cpa', 'Cpa.g.sc42.124' => 'cpa', 'Cpa.g.sc55.12' => 'cpa', 'CsaV3_3G008760' => 'csa', 'CsaV3_3G048090' => 'csa', 'CsaV3_6G044870' => 'csa', 'CsaV3_6G044880' => 'csa', 'CsaV3_6G044890' => 'csa', 'CsaV3_6G044900' => 'csa', 'CsaV3_6G044910' => 'csa', 'CsaV3_6G044920' => 'csa', 'CsaV3_6G044930' => 'csa', 'CSS0002396' => 'camsi', 'CSS0002553' => 'camsi', 'CSS0003236' => 'camsi', 'CSS0009642' => 'camsi', 'CSS0010426' => 'camsi', 'CSS0012869' => 'camsi', 'CSS0019985' => 'camsi', 'CSS0022064' => 'camsi', 'CSS0022796' => 'camsi', 'CSS0030653' => 'camsi', 'CSS0030943' => 'camsi', 'CSS0038385' => 'camsi', 'CSS0046455' => 'camsi', 'CSS0047361' => 'camsi', 'CSS0048872' => 'camsi', 'DCAR_005724' => 'dca', 'DCAR_014179' => 'dca', 'DCAR_015281' => 'dca', 'DCAR_021393' => 'dca', 'DCAR_021606' => 'dca', 'DCAR_021607' => 'dca', 'Dinv00225' => 'din', 'Dinv00226' => 'din', 'Dinv13570' => 'din', 'Dinv13581' => 'din', 'Dinv13585' => 'din', 'Dinv13586' => 'din', 'Dinv24145' => 'din', 'Dinv36945' => 'din', 'Dinv36947' => 'din', 'Dinv36948' => 'din', 'Dinv36949' => 'din', 'Dinv36950' => 'din', 'Dinv44869' => 'din', 'Duzib093G0121' => 'dzi', 'Duzib138G0615' => 'dzi', 'Duzib138G1028' => 'dzi', 'Duzib138G1258' => 'dzi', 'Duzib138G1294' => 'dzi', 'Duzib150G0030' => 'dzi', 'Duzib150G0433' => 'dzi', 'Duzib264G0896' => 'dzi', 'ECA232G0492' => 'eca', 'ECA232G2865' => 'eca', 'ECA234G4606' => 'eca', 'ECA236G2097' => 'eca', 'ECA238G0273' => 'eca', 'ECA238G0288' => 'eca', 'ECA238G0398' => 'eca', 'EL10Ac1g00498' => 'bvu', 'EL10Ac6g15189' => 'bvu', 'Eucgr.C00854' => 'egr', 'Eucgr.C00856' => 'egr', 'Eucgr.C00857' => 'egr', 'Eucgr.C00858' => 'egr', 'Eucgr.C00861' => 'egr', 'Eucgr.C00863' => 'egr', 'Eucgr.C00864' => 'egr', 'Eucgr.C03411' => 'egr', 'Eucgr.C03413' => 'egr', 'Eucgr.C03414' => 'egr', 'Eucgr.F00432' => 'egr', 'Eucgr.H02441' => 'egr', 'Eucgr.H02443' => 'egr', 'Eucgr.H02445' => 'egr', 'Eucgr.H02446' => 'egr', 'Eucgr.I02617' => 'egr', 'FAN01G1224' => 'fan', 'FAN01G1303' => 'fan', 'FAN01G1611' => 'fan', 'FAN01G2520' => 'fan', 'FAN03G1995' => 'fan', 'FAN03G2642' => 'fan', 'FAN06G0776' => 'fan', 'FAN06G0968' => 'fan', 'FAN06G1229' => 'fan', 'FAN06G1465' => 'fan', 'FAN06G3505' => 'fan', 'FAN10G0636' => 'fan', 'FAN10G1326' => 'fan', 'FAN10G3532' => 'fan', 'FAN10G4141' => 'fan', 'FAN10G4349' => 'fan', 'FAN11G3200' => 'fan', 'FAN13G2628' => 'fan', 'FAN16G0883' => 'fan', 'FAN18G3970' => 'fan', 'FAN19G0148' => 'fan', 'FAN19G0298' => 'fan', 'FAN19G0630' => 'fan', 'FAN19G0790' => 'fan', 'FAN19G0925' => 'fan', 'FAN19G1281' => 'fan', 'FAN19G1435' => 'fan', 'FAN19G1471' => 'fan', 'FAN19G1696' => 'fan', 'FAN19G1734' => 'fan', 'FAN19G2105' => 'fan', 'FAN19G2442' => 'fan', 'FAN19G2443' => 'fan', 'FAN19G2448' => 'fan', 'FAN19G2767' => 'fan', 'FAN21G2487' => 'fan', 'FAN23G0924' => 'fan', 'FAN26G1462' => 'fan', 'FAN26G2009' => 'fan', 'FAN26G3026' => 'fan', 'FAN26G3198' => 'fan', 'FAN28G0161' => 'fan', 'FAN28G1302' => 'fan', 'FAN28G1396' => 'fan', 'FAN28G1969' => 'fan', 'FAN28G2132' => 'fan', 'FAN28G2584' => 'fan', 'FAN28G2866' => 'fan', 'FAN28G3021' => 'fan', 'FvH4_1g07960' => 'fve', 'FvH4_1g12660' => 'fve', 'FvH4_1g19380' => 'fve', 'FvH4_1g19390' => 'fve', 'FvH4_1g19400' => 'fve', 'FvH4_1g19403' => 'fve', 'FvH4_1g19404' => 'fve', 'FvH4_1g19420' => 'fve', 'FvH4_1g19450' => 'fve', 'FvH4_1g19460' => 'fve', 'FvH4_1g19464' => 'fve', 'FvH4_1g19480' => 'fve', 'FvH4_3g05830' => 'fve', 'FvH4_4g12080' => 'fve', 'FvH4_5g34510' => 'fve', 'FvH4_7g15020' => 'fve', 'FvH4_7g15600' => 'fve', 'FvH4_7g15610' => 'fve', 'FvH4_7g15620' => 'fve', 'FvH4_7g15650' => 'fve', 'Glyma.01G059450' => 'gma', 'Glyma.07G067200' => 'gma', 'Glyma.07G067266' => 'gma', 'Glyma.07G067332' => 'gma', 'Glyma.08G181000' => 'gma', 'Glyma.08G277200' => 'gma', 'Glyma.10G104700' => 'gma', 'Glyma.15G051400' => 'gma', 'Glyma.16G033176' => 'gma', 'Glyma.16G033251' => 'gma', 'Glyma.16G033326' => 'gma', 'Glyma.18G148200' => 'gma', 'Glyma.18G148500' => 'gma', 'Gohir.A05G031500' => 'ghi', 'Gohir.A05G031566' => 'ghi', 'Gohir.A06G031400' => 'ghi', 'Gohir.A12G107700' => 'ghi', 'Gohir.A13G017800' => 'ghi', 'Gohir.A13G017900' => 'ghi', 'Gohir.A13G018032' => 'ghi', 'Gohir.D05G032850' => 'ghi', 'Gohir.D05G032900' => 'ghi', 'Gohir.D05G033000' => 'ghi', 'Gohir.D06G030600' => 'ghi', 'Gohir.D12G110900' => 'ghi', 'Gohir.D13G018900' => 'ghi', 'Gohir.D13G019001' => 'ghi', 'Gorai.008G120300' => 'gra', 'Gorai.009G033100' => 'gra', 'Gorai.009G033300' => 'gra', 'Gorai.009G033400' => 'gra', 'Gorai.010G033600' => 'gra', 'Gorai.013G021000' => 'gra', 'Gorai.013G021100' => 'gra', 'GSVIVG01003958001' => 'vvi', 'GSVIVG01003959001' => 'vvi', 'GSVIVG01003960001' => 'vvi', 'GSVIVG01003961001' => 'vvi', 'GSVIVG01015164001' => 'vvi', 'GSVIVG01015165001' => 'vvi', 'GSVIVG01026986001' => 'vvi', 'GSVIVG01026987001' => 'vvi', 'HanXRQChr04g0119931' => 'han', 'HanXRQChr08g0227181' => 'han', 'HanXRQChr12g0369001' => 'han', 'HanXRQChr14g0444241' => 'han', 'HanXRQChr14g0444251' => 'han', 'HanXRQChr14g0444261' => 'han', 'HanXRQChr14g0444281' => 'han', 'HanXRQChr14g0444321' => 'han', 'HanXRQChr14g0444331' => 'han', 'HanXRQChr14g0444351' => 'han', 'HanXRQChr14g0444361' => 'han', 'HanXRQChr15g0483081' => 'han', 'Haze_03888' => 'cav', 'Haze_03889' => 'cav', 'Haze_03891' => 'cav', 'Haze_03892' => 'cav', 'Haze_03906' => 'cav', 'Haze_03911' => 'cav', 'Haze_10504' => 'cav', 'Haze_10507' => 'cav', 'Haze_17671' => 'cav', 'Haze_17672' => 'cav', 'Haze_22477' => 'cav', 'Hma1.2p1_0125F.1_g058720' => 'hma', 'Hma1.2p1_0369F.1_g137410' => 'hma', 'Hma1.2p1_0369F.1_g137420' => 'hma', 'Hma1.2p1_0623F.1_g190930' => 'hma', 'Hma1.2p1_0802F.1_g220600' => 'hma', 'Hma1.2p1_0802F.1_g220620' => 'hma', 'Hma1.2p1_1002F.1_g246640' => 'hma', 'Hma1.2p1_1093F.1_g256290' => 'hma', 'Hma1.2p1_2571F.1_g324620' => 'hma', 'HPP92_027457' => 'vpl', 'HPP92_027458' => 'vpl', 'HPP92_027459' => 'vpl', 'Hund14082' => 'sun', 'Lalb_Chr04g0259161' => 'lal', 'Lalb_Chr20g0123141' => 'lal', 'Lalb_Chr20g0123151' => 'lal', 'Lj1P1103T20' => 'lonja', 'Lj2A527T46' => 'lonja', 'Lj2A528T18' => 'lonja', 'Lj2A529T42' => 'lonja', 'Lj2A529T43' => 'lonja', 'Lj2A530T43' => 'lonja', 'Lj2A530T44' => 'lonja', 'Lj2A531T42' => 'lonja', 'Lj2C527T3' => 'lonja', 'Lj2C529T0' => 'lonja', 'Lj2C530T4' => 'lonja', 'Lj2C531T4' => 'lonja', 'Lj2P532T14' => 'lonja', 'Lj2P543T6' => 'lonja', 'Lj3g0014322' => 'lja', 'Lj3g0021653' => 'lja', 'Lj4C87T4' => 'lonja', 'Lj4g0000606' => 'lja', 'Lj6g0000750' => 'lja', 'Lj6g0005498' => 'lja', 'Lj6g0024693' => 'lja', 'Lj7C257T6' => 'lonja', 'Lj7C258T6' => 'lonja', 'Lj7C258T7' => 'lonja', 'Lju188A7G34' => 'lonja', 'Lju188A7T38' => 'lonja', 'Lju188C6G5' => 'lonja', 'Lju188C7T5' => 'lonja', 'Lju188C7T6' => 'lonja', 'Lsat_1_v5_gn_2_70080' => 'lsa', 'Lsat_1_v5_gn_2_70140' => 'lsa', 'Lsat_1_v5_gn_2_70160' => 'lsa', 'Lsat_1_v5_gn_3_63240' => 'lsa', 'Lsat_1_v5_gn_7_82740' => 'lsa', 'Lsat_1_v5_gn_9_80320' => 'lsa', 'Manes.01G253800' => 'mes', 'Manes.04G116000' => 'mes', 'Manes.05G031400' => 'mes', 'Manes.07G041600' => 'mes', 'Manes.12G125201' => 'mes', 'Manes.13G101100' => 'mes', 'Manes.13G101150' => 'mes', 'Manes.13G101200' => 'mes', 'Manes.13G101300' => 'mes', 'Manes.18G056200' => 'mes', 'MBI10_g20067_MAGBIO' => 'mbi', 'MBI10_g24194_MAGBIO' => 'mbi', 'MBI10_g37691_MAGBIO' => 'mbi', 'MBI10_g37692_MAGBIO' => 'mbi', 'MBI10_g44176_MAGBIO' => 'mbi', 'MBI10_g44177_MAGBIO' => 'mbi', 'MBI10_g44178_MAGBIO' => 'mbi', 'MBI16_g06021_MAGBIO' => 'mbi', 'MBI16_g20423_MAGBIO' => 'mbi', 'MBI16_g24845_MAGBIO' => 'mbi', 'MBI16_g24846_MAGBIO' => 'mbi', 'MBI16_g24847_MAGBIO' => 'mbi', 'MBI16_g24848_MAGBIO' => 'mbi', 'MBI16_g24849_MAGBIO' => 'mbi', 'MBI16_g24850_MAGBIO' => 'mbi', 'MBI16_g25429_MAGBIO' => 'mbi', 'MBI16_g25430_MAGBIO' => 'mbi', 'MBI16_g25431_MAGBIO' => 'mbi', 'MBI16_g27557_MAGBIO' => 'mbi', 'MBI16_g27558_MAGBIO' => 'mbi', 'MBI16_g27559_MAGBIO' => 'mbi', 'MBI16_g27561_MAGBIO' => 'mbi', 'MBI16_g27562_MAGBIO' => 'mbi', 'MBI16_g27564_MAGBIO' => 'mbi', 'MBI16_g27565_MAGBIO' => 'mbi', 'MBI16_g27897_MAGBIO' => 'mbi', 'MBI16_g44244_MAGBIO' => 'mbi', 'MBI16_g47223_MAGBIO' => 'mbi', 'MBI16_g47224_MAGBIO' => 'mbi', 'MBI16_g47225_MAGBIO' => 'mbi', 'MBI16_g47324_MAGBIO' => 'mbi', 'MBI16_g47325_MAGBIO' => 'mbi', 'MBI16_g47373_MAGBIO' => 'mbi', 'MD00G1112100' => 'mdo', 'MD01G1041000' => 'mdo', 'MD01G1068500' => 'mdo', 'MD01G1068700' => 'mdo', 'MD01G1068800' => 'mdo', 'MD02G1083100' => 'mdo', 'MD02G1083300' => 'mdo', 'MD02G1083600' => 'mdo', 'MD02G1083700' => 'mdo', 'MD02G1083800' => 'mdo', 'MD02G1084000' => 'mdo', 'MD03G1019100' => 'mdo', 'MD08G1200700' => 'mdo', 'MD10G1101200' => 'mdo', 'MD15G1211400' => 'mdo', 'MD15G1310300' => 'mdo', 'Medtr2g008220' => 'mtr', 'Medtr2g008225' => 'mtr', 'Medtr2g008226' => 'mtr', 'Medtr2g046620' => 'mtr', 'Medtr3g435310' => 'mtr', 'Medtr4g077960' => 'mtr', 'Medtr4g123553' => 'mtr', 'Medtr5g066410' => 'mtr', 'Medtr6g036650' => 'mtr', 'Medtr6g042310' => 'mtr', 'Medtr7g067120' => 'mtr', 'Medtr7g067330' => 'mtr', 'Medtr8g007565' => 'mtr', 'Medtr8g007650' => 'mtr', 'Medtr8g028755' => 'mtr', 'Medtr8g068330' => 'mtr', 'Medtr8g068340' => 'mtr', 'Medtr8g068360' => 'mtr', 'MELO3C003508.2' => 'cme', 'MELO3C006093.2' => 'cme', 'MELO3C007706.2' => 'cme', 'MELO3C007707.2' => 'cme', 'MELO3C007708.2' => 'cme', 'Migut.B00485' => 'egut', 'Migut.B01787' => 'egut', 'Migut.D01686' => 'egut', 'Migut.F01592' => 'egut', 'Migut.H02283' => 'egut', 'Migut.H02284' => 'egut', 'Migut.O00969' => 'egut', 'MSTRG.24686' => 'ama', 'MSTRG.2602' => 'ama', 'Nitab4.5_0000128g0040' => 'nta', 'Nitab4.5_0000200g0190' => 'nta', 'Nitab4.5_0000402g0010' => 'nta', 'Nitab4.5_0000402g0030' => 'nta', 'Nitab4.5_0000574g0020' => 'nta', 'Nitab4.5_0000690g0070' => 'nta', 'Nitab4.5_0000858g0060' => 'nta', 'Nitab4.5_0001225g0190' => 'nta', 'Nitab4.5_0001583g0150' => 'nta', 'Nitab4.5_0001636g0070' => 'nta', 'Nitab4.5_0002095g0110' => 'nta', 'Nitab4.5_0002364g0020' => 'nta', 'Nitab4.5_0009820g0010' => 'nta', 'Nitab4.5_0009820g0030' => 'nta', 'Nitab4.5_0012224g0010' => 'nta', 'Nitab4.5_0012224g0020' => 'nta', 'Nitab4.5_0012555g0050' => 'nta', 'Nitab4.5_0013415g0010' => 'nta', 'Nitab4.5_0013415g0020' => 'nta', 'Nitab4.5_0022406g0010' => 'nta', 'Nn1g05605' => 'nnu', 'Nn1g05609' => 'nnu', 'Nn1g05611' => 'nnu', 'Nn1g08282' => 'nnu', 'Nn1g09411' => 'nnu', 'Nn2g12723' => 'nnu', 'Nn2g15161' => 'nnu', 'Nn5g27867' => 'nnu', 'Oeu002140.1' => 'oeu', 'Oeu014199.1' => 'oeu', 'Oeu017111.1' => 'oeu', 'Oeu017112.4' => 'oeu', 'Oeu031124.1' => 'oeu', 'Oeu031125.1' => 'oeu', 'Oeu031127.1' => 'oeu', 'Oeu031131.1' => 'oeu', 'Oeu031132.1' => 'oeu', 'Oeu031133.1' => 'oeu', 'Os01g0865400' => 'osa', 'Os02g0589400' => 'osa', 'Os02g0803900' => 'osa', 'Os03g0702000' => 'osa', 'Os03g0702500' => 'osa', 'Os03g0804900' => 'osa', 'Os04g0197500' => 'osa', 'Os06g0216100' => 'osa', 'Os07g0201300' => 'osa', 'Os07g0201500' => 'osa', 'Os07g0201800' => 'osa', 'Os07g0202000' => 'osa', 'Os10g0122000' => 'osa', 'Os12g0561900' => 'osa', 'Peaxi162Scf00020g00121' => 'pax', 'Peaxi162Scf00020g01128' => 'pax', 'Peaxi162Scf00084g00121' => 'pax', 'Peaxi162Scf00084g00126' => 'pax', 'Peaxi162Scf00085g00141' => 'pax', 'Peaxi162Scf00085g00152' => 'pax', 'Peaxi162Scf00085g00166' => 'pax', 'Peaxi162Scf00085g00191' => 'pax', 'Peaxi162Scf00085g00201' => 'pax', 'Peaxi162Scf00085g00202' => 'pax', 'Peaxi162Scf00196g00319' => 'pax', 'Peaxi162Scf00299g00058' => 'pax', 'Peaxi162Scf00585g00028' => 'pax', 'Peaxi162Scf00773g00031' => 'pax', 'Peaxi162Scf00775g00042' => 'pax', 'Peaxi162Scf00913g00035' => 'pax', 'Peaxi162Scf01142g00019' => 'pax', 'Peaxi162Scf01414g00002' => 'pax', 'PGR004G0049' => 'pgr', 'PGR004G0776' => 'pgr', 'PGR004G2062' => 'pgr', 'PGR004G2681' => 'pgr', 'PGR031G0510' => 'pgr', 'PGR042G2320' => 'pgr', 'PGR102G1845' => 'pgr', 'PGR102G2972' => 'pgr', 'PGSC0003DMG400000059' => 'stu', 'PGSC0003DMG400016121' => 'stu', 'PGSC0003DMG400016122' => 'stu', 'PGSC0003DMG400016123' => 'stu', 'PGSC0003DMG400016124' => 'stu', 'PGSC0003DMG400016125' => 'stu', 'PGSC0003DMG400016190' => 'stu', 'PGSC0003DMG400016191' => 'stu', 'PGSC0003DMG400016192' => 'stu', 'PGSC0003DMG400016193' => 'stu', 'PGSC0003DMG400016194' => 'stu', 'PGSC0003DMG400016195' => 'stu', 'PGSC0003DMG400021116' => 'stu', 'PGSC0003DMG400038217' => 'stu', 'PGSC0003DMG401000058' => 'stu', 'Phvul.003G288100' => 'pvu', 'Phvul.003G288200' => 'pvu', 'Phvul.006G208300' => 'pvu', 'Phvul.006G208400' => 'pvu', 'Phvul.006G208500' => 'pvu', 'Phvul.010G036800' => 'pvu', 'Phvul.010G036900' => 'pvu', 'Phvul.010G037000' => 'pvu', 'Phvul.010G037600' => 'pvu', 'Potri.001G030600' => 'ptr', 'Potri.002G162300' => 'ptr', 'Potri.003G184400' => 'ptr', 'Potri.010G182575' => 'ptr', 'Potri.010G182650' => 'ptr', 'Potri.012G034100' => 'ptr', 'Potri.014G088400' => 'ptr', 'Potri.017G042800' => 'ptr', 'Potri.018G140401' => 'ptr', 'Prupe.1G534200' => 'ppe', 'Prupe.2G174700' => 'ppe', 'Prupe.2G174800' => 'ppe', 'Prupe.2G175000' => 'ppe', 'Prupe.6G203500' => 'ppe', 'Prupe.6G203700' => 'ppe', 'Prupe.6G203800' => 'ppe', 'Prupe.6G203900' => 'ppe', 'Prupe.6G204000' => 'ppe', 'Prupe.7G205500' => 'ppe', 'Prupe.I002600' => 'ppe', 'Psat1g218280' => 'psa', 'Psat1g218320' => 'psa', 'Psat3g130800' => 'psa', 'Psat3g130880' => 'psa', 'Psat4g117080' => 'psa', 'Psat4g156560' => 'psa', 'PSO017G1566' => 'pso', 'PSO135G0029' => 'pso', 'PSO135G0312' => 'pso', 'PSO135G0532' => 'pso', 'PSO135G0935' => 'pso', 'PSO135G0984' => 'pso', 'PSO210G3631' => 'pso', 'PSO210G4884' => 'pso', 'PSO357G0202' => 'pso', 'PSO384G3319' => 'pso', 'PSO384G3376' => 'pso', 'PSO541G1634' => 'pso', 'PSO541G2628' => 'pso', 'PSO541G5568' => 'pso', 'PSO541G6285' => 'pso', 'PSO675G2315' => 'pso', 'PSO675G2431' => 'pso', 'PSO675G3447' => 'pso', 'PSO832G3099' => 'pso', 'QL02p062011' => 'qlo', 'QL02p071296' => 'qlo', 'QL03p038457' => 'qlo', 'QL04p054495' => 'qlo', 'QL04p054573' => 'qlo', 'QL04p054653' => 'qlo', 'QL04p054809' => 'qlo', 'QL04p054856' => 'qlo', 'QL04p054920' => 'qlo', 'QL05p016916' => 'qlo', 'QL06p035957' => 'qlo', 'QL06p035970' => 'qlo', 'QL06p035989' => 'qlo', 'QL06p036026' => 'qlo', 'QL06p036037' => 'qlo', 'QL06p036057' => 'qlo', 'QL12p001468' => 'qlo', 'RcHm_v2.0_Chr1g0357061' => 'rch', 'RcHm_v2.0_Chr1g0357071' => 'rch', 'RcHm_v2.0_Chr1g0358281' => 'rch', 'RcHm_v2.0_Chr1g0358291' => 'rch', 'RcHm_v2.0_Chr1g0358321' => 'rch', 'RcHm_v2.0_Chr1g0358331' => 'rch', 'RcHm_v2.0_Chr2g0093841' => 'rch', 'RcHm_v2.0_Chr2g0093861' => 'rch', 'RcHm_v2.0_Chr2g0110741' => 'rch', 'RcHm_v2.0_Chr2g0110761' => 'rch', 'RcHm_v2.0_Chr2g0110781' => 'rch', 'RcHm_v2.0_Chr2g0110791' => 'rch', 'RcHm_v2.0_Chr2g0110831' => 'rch', 'RcHm_v2.0_Chr2g0110841' => 'rch', 'RcHm_v2.0_Chr2g0110861' => 'rch', 'RcHm_v2.0_Chr2g0110881' => 'rch', 'RcHm_v2.0_Chr2g0110901' => 'rch', 'RcHm_v2.0_Chr2g0110931' => 'rch', 'RcHm_v2.0_Chr2g0111551' => 'rch', 'RcHm_v2.0_Chr7g0235171' => 'rch', 'Rhsim06G0070900' => 'rsi', 'Rhsim07G0012000' => 'rsi', 'Rhsim07G0012100' => 'rsi', 'Rhsim07G0012200' => 'rsi', 'Rhsim07G0012300' => 'rsi', 'Rhsim08G0017300' => 'rsi', 'Rhsim08G0017400' => 'rsi', 'Rhsim08G0017500' => 'rsi', 'Rhsim08G0017600' => 'rsi', 'Rhsim08G0017700' => 'rsi', 'Rhsim10G0173800' => 'rsi', 'Rhsim10G0173900' => 'rsi', 'Rhsim10G0174000' => 'rsi', 'Rhsim10G0174100' => 'rsi', 'Sabra01G0022000' => 'sbr', 'Sabra03G0135100' => 'sbr', 'Sabra03G0146700' => 'sbr', 'Sabra05G0031200' => 'sbr', 'Sabra10G0140000' => 'sbr', 'Sabra10G0140100' => 'sbr', 'Sabra12G0023200' => 'sbr', 'Sabra12G0023300' => 'sbr', 'Sabra14G0064000' => 'sbr', 'Sabra14G0064100' => 'sbr', 'Sabra15G0121500' => 'sbr', 'Sabra18G0114700' => 'sbr', 'SalBow3G1463' => 'sbo', 'SalBow3G1968' => 'sbo', 'SalBow3G2328' => 'sbo', 'SalBow3G3153' => 'sbo', 'SalBow3G4085' => 'sbo', 'SalBow6G2940' => 'sbo', 'SalBow6G5341' => 'sbo', 'SalBow6G5701' => 'sbo', 'Sc16g0000590' => 'sci', 'Sc16g0000600' => 'sci', 'Sc23g0002690' => 'sci', 'Sc25g0003750' => 'sci', 'Sc25g0003760' => 'sci', 'Sed0006676' => 'sed', 'Sed0008615' => 'sed', 'Sed0012047' => 'sed', 'Sed0013573' => 'sed', 'Sed0015451' => 'sed', 'Sed0019552' => 'sed', 'Sed0024042' => 'sed', 'Sed0024143' => 'sed', 'Sed0025645' => 'sed', 'Sed0026077' => 'sed', 'Sed0028191' => 'sed', 'SEGI_03457' => 'sgi', 'SEGI_27823' => 'sgi', 'SEGI_28693' => 'sgi', 'SEGI_31682' => 'sgi', 'SEGI_32540' => 'sgi', 'SEGI_33303' => 'sgi', 'SEGI_33696' => 'sgi', 'SEGI_34930' => 'sgi', 'SGA_v2.0_scaffold13G06461' => 'sas', 'SGA_v2.0_scaffold195G40865' => 'sas', 'SGA_v2.0_scaffold195G40867' => 'sas', 'SGA_v2.0_scaffold27G11685' => 'sas', 'SGA_v2.0_scaffold27G11689' => 'sas', 'SGA_v2.0_scaffold4G02291' => 'sas', 'SHI11226' => 'shi', 'Solyc02g070020.1' => 'sly', 'Solyc05g051360.1' => 'sly', 'Solyc11g010740.3' => 'sly', 'Solyc11g010750.1' => 'sly', 'Solyc11g010760.1' => 'sly', 'Solyc11g010780.1' => 'sly', 'Solyc11g010790.1' => 'sly', 'Solyc11g010800.2' => 'sly', 'Solyc11g010810.1' => 'sly', 'Solyc11g010813.1' => 'sly', 'Sopen01g038760' => 'spe', 'Sopen02g019180' => 'spe', 'Sopen05g029750' => 'spe', 'Sopen11g005550' => 'spe', 'Sopen11g005560' => 'spe', 'Sopen11g005570' => 'spe', 'Sopen11g005580' => 'spe', 'Sopen11g005590' => 'spe', 'Sp1g28090' => 'spa', 'Sp2g28650' => 'spa', 'Sp4g01620' => 'spa', 'Sp6g06670' => 'spa', 'TAR375G0944' => 'tar', 'TAR376G0055' => 'tar', 'TAR376G0402' => 'tar', 'TAR376G0614' => 'tar', 'TAR381G0268' => 'tar', 'TAR381G1417' => 'tar', 'TAR628G0365' => 'tar', 'TAR628G1240' => 'tar', 'TAR636G1859' => 'tar', 'TAR636G2220' => 'tar', 'TAR636G3577' => 'tar', 'THA.LOC104810681' => 'tha', 'THA.LOC104819285' => 'tha', 'Thecc.01G088800' => 'tca', 'Thecc.01G089000' => 'tca', 'Thecc.01G354900' => 'tca', 'Thecc.01G355000' => 'tca', 'Thecc.01G355100' => 'tca', 'Thecc.08G072800' => 'tca', 'Thecc.09G084000' => 'tca', 'Thecc.09G084200' => 'tca', 'Thecc.09G084300' => 'tca', 'Thecc.09G084400' => 'tca', 'Thecc.09G084500' => 'tca', 'Thecc.09G084600' => 'tca', 'Thhalv10000154m.g' => 'esa', 'Thhalv10007607m.g' => 'esa', 'Thhalv10028640m.g' => 'esa', 'TPR.G19737' => 'tpr', 'TPR.G19752' => 'tpr', 'TPR.G25302' => 'tpr', 'TPR.G29831' => 'tpr', 'TPR.G29840' => 'tpr', 'TWI59G0268' => 'twi', 'TWI74G0954' => 'twi', 'TWI74G1490' => 'twi', 'TWI77G0086' => 'twi', 'TWI77G0915' => 'twi', 'TWI77G0932' => 'twi', 'unitig_32.g11079' => 'ugi', 'unitig_32.g11481' => 'ugi', 'unitig_32.g11482' => 'ugi', 'vmacro13014' => 'vma', 'vmacro13015' => 'vma', 'vmacro13018' => 'vma', 'vmacro13019' => 'vma', 'vmacro13248' => 'vma', 'vmacro13249' => 'vma', 'vmacro13250' => 'vma', 'vmacro13251' => 'vma', 'vmacro18543' => 'vma', 'vmacro18544' => 'vma', 'vmacro18545' => 'vma', 'vmacro18546' => 'vma', 'vmacro18547' => 'vma', 'VMungo0251G1915' => 'vmu', 'VMungo0331G0131' => 'vmu', 'VMungo0331G1009' => 'vmu', 'VMungo0331G1150' => 'vmu', 'VMungo0331G1404' => 'vmu', 'VMungo0331G1469' => 'vmu', 'VMungo0540G0275' => 'vmu', 'VMungo0540G1465' => 'vmu', 'VMungo0540G1468' => 'vmu', 'VMungo1127G1884' => 'vmu', 'VMungo1215G3050' => 'vmu', 'Zm00001eb051070' => 'zma', 'Zm00001eb105580' => 'zma', 'Zm00001eb107760' => 'zma', 'Zm00001eb146840' => 'zma', 'Zm00001eb146850' => 'zma', 'Zm00001eb146860' => 'zma', 'Zm00001eb302820' => 'zma' ) $gf_id = 'ORTHO05D000465' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000465' ) $data_identifier = 'ORTHO05D000465' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 7, 'aar' => (int) 7, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 16, 'arhy' => (int) 23, 'ath' => (int) 3, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 3, 'can' => (int) 6, 'cansat' => (int) 13, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 18, 'cde' => (int) 2, 'cfa' => (int) 8, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 3, 'col' => (int) 10, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 15, 'dca' => (int) 6, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 2, 'egr' => (int) 16, 'fan' => (int) 49, 'fve' => (int) 20, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 9, 'vpl' => (int) 3, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 23, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mbi' => (int) 33, 'mdo' => (int) 16, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 2, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 14, 'pax' => (int) 18, 'pgr' => (int) 8, 'stu' => (int) 15, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppe' => (int) 11, 'psa' => (int) 6, 'pso' => (int) 19, 'qlo' => (int) 17, 'rch' => (int) 20, 'rsi' => (int) 14, 'sbr' => (int) 12, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 2, 'tca' => (int) 12, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 3, 'vma' => (int) 13, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb302820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1